Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015952983.1_cds_XP_016492370.1_82588
CDS Infomation

[gene=LOC107811891] [db_xref=GeneID:107811891] [protein=spastin-like] [protein_id=XP_016492370.1] [location=complement(join(3706..3822,4615..4712,4836..4891,5885..5976,6661..6710,7480..7603,8993..9073,9163..9278,9357..9452,9537..9813,11174..11193,11302..11393,12532..12839))] [gbkey=CDS]
Sequence

ATGAGTTTTCTCAAAGACCTGGCTGAAACCCTAAGCTCGATCTTTTCGGACACTCCATCA
TCGTCTTCGCCTCAGAACGATCGTAACCTAAACTCCGGCGATCGGATGATGGACGGCGTT
GCCACCGGCAACGAACGGGCGGCGTATAAGCTGAAAGGCTACTTTGATTTGGCCAAAGAA
GAGATCGACAAAGCCGTTAGGGCTGAAGAATGGGGATTGGCTGATGATGCAATTTCACAT
TACCAAAATGCTCAGAAAATACTCGCCGAAGGAATTTCTACTCCGGTTCCTTCGTATGTT
ACTTCTAGTGAACAAGAGAAAGTGAAATCATATCGTCAAAAGCTAACAAAGTGGAAGTCT
CAAGTTTCAGAGAGACTTCAGACTCTAAGTCGACGAGCAGGTGGCACATCTGCAGTCAAG
ATTTCAGCACCTCAAACCCAAAGGCTGGCTGTTTCACAATCAAGTTCATCTGCTCGAAAA
GGAGAATCTCGATCTGCGCCTAGTTCTGGGAGAGACAGCTCTGTTATGAGGGTTCCTAGT
TCCGGAAAAGACAGCTCTGTTGCGAGGGTTCCTAGTAATAGCATATCAAGCCACAAACCT
TCACAGGAATCTGCTAATGGGTATGATCCAAAGTTGGTTGACATGATAAATTCTGTAATT
GTGGATAGAAGCCCCTCTGTTAAATGGGAAGATATTGCGGGACTTGAAAAGGCAAAGCAA
GCTCTCTTAGAGATGGTAATTCTACCAACCAAAAGAAAGGACCTCTTCACTGGCTTAAGA
AGGCCTGCTAGAGGTCTACTTCTTTTTGGACCACCGGGTACTGGAAAAACCATGCTTGCC
AAAGCAGTAGCTTCAGAGTCGGAGGCAACATTTTTCAATGTGTCTGCTTCTTCGCTAACA
TCAAAGTGGGTTGGAGAGGGTGAAAAGCTTGTCAAGACACTTTTCATGGTTGCCATTTCC
AGGAAGCCATCTGTAATTTTCATGGATGAGATAGATAGTATTATGTCAACTAGGACTACC
AATGAGAATGAAGCAAGCAGAAGGTTGAAATCAGAGTTTCTAGTTCAGTTTGATGGGGTG
ACATCAAATTCTGATGACCTGGTAATTGTAATTGGTGCCACGAATAAGCCACAGGAGTTG
GATGATGCTGTTCTAAGGAGATTGGTCAAAAGAATATATATTCCTTTACCTGATGCTAAT
GTTAGAAGACAACTTCTGAAACACAGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTTT
GTTTATTGGATGATAGGTGGAGATCTAGAACCACTAGTGAGAGACACAGAAGGGTATTCT
GGAAGTGATCTTCAAGCCTTGTGCGAGGAGGCTGCAATGATGCCGATCAGAGAGCTTGGT
GCTAACATTCTCAGAGTCAATGTAGATCAGGTAAGGGGTTTAAGATATGGAGATTTCCAA
AAGGCCATGACAGTGATTAGGCCTAGTCTGCAAAAGAGCAAGTGGGAGGAACTTGAACGG
TGGAACCAAGAGTTTGGTGCAAACTAA

Peptide Sequence

PEP ID

XP_016492370.1
PEP Infomation

PREDICTED: spastin-like [Nicotiana tabacum]
Sequence

MSFLKDLAETLSSIFSDTPSSSSPQNDRNLNSGDRMMDGVATGNERAAYKLKGYFDLAKE
EIDKAVRAEEWGLADDAISHYQNAQKILAEGISTPVPSYVTSSEQEKVKSYRQKLTKWKS
QVSERLQTLSRRAGGTSAVKISAPQTQRLAVSQSSSSARKGESRSAPSSGRDSSVMRVPS
SGKDSSVARVPSNSISSHKPSQESANGYDPKLVDMINSVIVDRSPSVKWEDIAGLEKAKQ
ALLEMVILPTKRKDLFTGLRRPARGLLLFGPPGTGKTMLAKAVASESEATFFNVSASSLT
SKWVGEGEKLVKTLFMVAISRKPSVIFMDEIDSIMSTRTTNENEASRRLKSEFLVQFDGV
TSNSDDLVIVIGATNKPQELDDAVLRRLVKRIYIPLPDANVRRQLLKHXKKKKKKKKKSF
VYWMIGGDLEPLVRDTEGYSGSDLQALCEEAAMMPIRELGANILRVNVDQVRGLRYGDFQ
KAMTVIRPSLQKSKWEELERWNQEFGAN

Transcript Sequence

Gene sequence data has not been registered.